SNP Profiles matching SPEC 160/9

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_Input profile	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
2._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
3._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
4._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
5._SPEC_160_/9	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
6._RUQ_51	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
7._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
8._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
9._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
10._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-08-267-8-39	CT	CC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._RUQ_55	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
13._RUQ_56	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
14._RUQ_4	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
15._RUQ_487	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
16._RUQ_1677	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
17._RUQ_1166	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
18._UF_668	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
19._RUQ_54	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
20._RUQ_1432	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CT	GT	CC	AA	CC	CC	CT	GT	AG	GT	AC	CG
1._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
2._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
3._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
4._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
5._SPEC_160_/9	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
6._RUQ_51	GG	CC	CT	GT	CC	AC	_	CC	_	GT	_	_	_	CG
7._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
8._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
9._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
10._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
11._GC-08-267-8-39	GG	CC	CT	GT	CC	AC	CC	CC	CT	GT	AG	GT	AC	CG
12._RUQ_55	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
13._RUQ_56	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
14._RUQ_4	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
15._RUQ_487	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
16._RUQ_1677	AG	CC	-	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
17._RUQ_1166	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
18._UF_668	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
19._RUQ_54	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
20._RUQ_1432	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	CC	CT	GT	AG	AA	GG	CT	CT	CT	CG	GG
1._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
2._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
3._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
4._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
5._SPEC_160_/9	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	CG	GG
6._RUQ_51	_	CC	AG	_	CT	_	_	_	GG	_	_	CT	_	GG
7._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
8._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
9._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
10._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	AA	GG	TT	CT	CT	CG	GG
11._GC-08-267-8-39	CG	CC	AG	CT	CT	GT	AG	_	GG	TT	CT	CT	CG	GG
12._RUQ_55	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
13._RUQ_56	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
14._RUQ_4	CG	CC	AG	-	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
15._RUQ_487	CG	CC	AG	-	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
16._RUQ_1677	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
17._RUQ_1166	CG	CC	AG	-	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
18._UF_668	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	GG
19._RUQ_54	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	GG	AG
20._RUQ_1432	CG	CC	AA	-	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG

Input profile: SPEC_160_/9 RUQ_51

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

3._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

4._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

5._SPEC_160_/9

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

6._SPEC_160_/9 RUQ_51

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._SPEC_160_/9 GC-08-267-8-39

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._SPEC_160_/9 GC-08-267-8-39

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._UF_667 RUQ_55

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._UF_676 RUQ_56

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._CC_11 RUQ_4

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._RIM_39_[MEX] RUQ_487

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._UF_168 RUQ_1677

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._VENC_4_/4_[FRA] RUQ_1166

92.7 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._UF_668

91.7 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

19._UF_221 RUQ_54

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

20._ICS_40 RUQ_1432

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484